Protein evolution and structural genomics
نویسندگان
چکیده
The genomic data available to computational biologists represents the product of the complex processes of evolution. In particular, the forces of mutation, duplication, and selection have acted to sculpt modern protein sequence and structure in the context of changing functional requirements. Just as crystallographers are able to determine protein structures through an analysis of X-ray diffraction patterns, scientists are learning to read the evolutionary history of proteins in order to infer and explain both structures and functions. This pursuit depends on the development of new computational approaches in order to make optimal use of genomic data, and requires interaction with experiment for comparison and verification of computational results.
منابع مشابه
Determination of protein function, evolution and interactions by structural genomics.
The genome sequencing projects and knowledge of the entire protein repertoires of many organisms have prompted new procedures and techniques for the large-scale determination of protein structure, function and interactions. Recently, new work has been carried out on the determination of the function and evolutionary relationships of proteins by experimental structural genomics, and the discover...
متن کاملStructural classification of proteins and structural genomics: new insights into protein folding and evolution
During the past decade, the Protein Structure Initiative (PSI) centres have become major contributors of new families, superfamilies and folds to the Structural Classification of Proteins (SCOP) database. The PSI results have increased the diversity of protein structural space and accelerated our understanding of it. This review article surveys a selection of protein structures determined by th...
متن کاملComparative genomics of human stem cell factor (SCF)
Stem cell factor (SCF) is a critical protein with key roles in the cell such as hematopoiesis, gametogenesis and melanogenesis. In the present study a comparative analysis on nucleotide sequences of SCF was performed in Humanoids using bioinformatics tools including NCBI-BLAST, MEGA6, and JBrowse. Our analysis of nucleotide sequences to find closely evolved organisms with high similarity by NCB...
متن کاملLinking Fold, Function and Phylogeny: A Comparative Genomics View on Protein (Domain) Evolution
Domains are the building blocks of all globular proteins and present one of the most useful levels at which protein function can be understood. Through recombination and duplication of a limited set of domains, proteomes evolved and the collection of protein superfamilies in an organism formed. As such, the presence of a shared domain can be regarded as an indicator of similar function and evol...
متن کاملSequences and topology: disorder, modularity, and post/pre translation modification.
Julian Gough began his research career in structural bioinformatics, but soon combined this with genomics and sequence analysis to study evolution, also producing the SUPERFAMILY database of structural domain assignments to genomes. Gough continues to examine molecular evolution across all species and applies bioinformatics at multiple levels; most recently to intrinsic protein disorder, functi...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
دوره 12 شماره
صفحات -
تاریخ انتشار 2000